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Small molecule agonists and antagonists of F-box protein-substrate interactions in auxin perception and signaling
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1P1M
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 6 277 12-14% PEG 40,000, 100mM BTP pH6.0, 200mM NaCl, EVAPORATION, temperature 277K, pH 6.00
Crystal Properties Matthews coefficient Solvent content 5.88 79.08
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 102.264 α = 90 b = 80.836 β = 104.87 c = 124.748 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315 2007-07-21 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ALS BEAMLINE 5.0.2 ALS 5.0.2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.7 50 75 23841 2
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.7 95
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1P1M 2.7 49.42 46883 23841 1232 46.1 0.187 0.183 0.272 0.2562 RANDOM 40.34
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 2.33 0.4 1.44 -3.57
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.979 r_dihedral_angle_3_deg 20.972 r_dihedral_angle_4_deg 20.832 r_dihedral_angle_1_deg 7.708 r_scangle_it 4.558 r_scbond_it 2.792 r_angle_refined_deg 2.767 r_mcangle_it 1.683 r_mcbond_it 0.981 r_nbtor_refined 0.333
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.979 r_dihedral_angle_3_deg 20.972 r_dihedral_angle_4_deg 20.832 r_dihedral_angle_1_deg 7.708 r_scangle_it 4.558 r_scbond_it 2.792 r_angle_refined_deg 2.767 r_mcangle_it 1.683 r_mcbond_it 0.981 r_nbtor_refined 0.333 r_nbd_refined 0.283 r_xyhbond_nbd_refined 0.207 r_chiral_restr 0.182 r_symmetry_vdw_refined 0.161 r_bond_refined_d 0.024 r_gen_planes_refined 0.007 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 5079 Nucleic Acid Atoms Solvent Atoms 226 Heterogen Atoms 53
Software Software Software Name Purpose REFMAC refinement DENZO data reduction SCALEPACK data scaling PHASER phasing