X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1MICROBATCH8293K2PO4 Peg3350, NaCl, Tris, pH 8.0, Microbatch, temperature 293K
Crystal Properties
Matthews coefficientSolvent content
1.9336.12

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 55.739α = 90
b = 59.024β = 90
c = 72.132γ = 90
Symmetry
Space GroupI 2 2 2

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100IMAGE PLATEMAR scanner 345 mm plate2007-05-29MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1ROTATING ANODERIGAKU MICROMAX-007 HF1.5418

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.645.6996.80.034236.5160601554622
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
11.61.6699.60.23761562

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (All)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (All)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONTHROUGHOUT1.616160601552176896.420.1970.1970.1960.219RANDOM10.302
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
0.61-0.56-0.05
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg39.985
r_dihedral_angle_4_deg15.204
r_dihedral_angle_3_deg12.636
r_dihedral_angle_1_deg5.575
r_scangle_it2.896
r_scbond_it2.056
r_angle_refined_deg1.537
r_mcangle_it1.025
r_angle_other_deg0.951
r_mcbond_it0.918
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg39.985
r_dihedral_angle_4_deg15.204
r_dihedral_angle_3_deg12.636
r_dihedral_angle_1_deg5.575
r_scangle_it2.896
r_scbond_it2.056
r_angle_refined_deg1.537
r_mcangle_it1.025
r_angle_other_deg0.951
r_mcbond_it0.918
r_symmetry_hbond_refined0.326
r_symmetry_vdw_other0.297
r_mcbond_other0.231
r_nbd_refined0.217
r_nbtor_refined0.175
r_nbd_other0.171
r_symmetry_vdw_refined0.161
r_xyhbond_nbd_refined0.125
r_chiral_restr0.093
r_nbtor_other0.085
r_bond_refined_d0.015
r_gen_planes_refined0.006
r_bond_other_d0.005
r_gen_planes_other0.001
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms789
Nucleic Acid Atoms
Solvent Atoms92
Heterogen Atoms5

Software

Software
Software NamePurpose
DENZOdata reduction
SCALEPACKdata scaling
REFMACrefinement
PDB_EXTRACTdata extraction
HKL-2000data collection
HKL-2000data reduction
HKL-2000data scaling
PHASERphasing