X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1MICROBATCH5.5293Citrate, PEG 6000, t-Butanol, pH 5.5, Microbatch, temperature 293K
Crystal Properties
Matthews coefficientSolvent content
1.9536.98

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 56.535α = 90
b = 59.169β = 90
c = 71.93γ = 90
Symmetry
Space GroupI 2 2 2

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDADSC QUANTUM 3152007-01-01MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONALS BEAMLINE 8.2.10.97956ALS8.2.1

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.4995094.90.05112.87197541874722
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
11.4991.5590.40.45.81772

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (All)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (All)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONTHROUGHOUT1.49945.69197541874496294.90.194560.194560.1940.213RANDOM11.565
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
1.18-1.05-0.13
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg38.25
r_dihedral_angle_4_deg17.264
r_dihedral_angle_3_deg14.672
r_dihedral_angle_1_deg5.628
r_scangle_it3.056
r_scbond_it2.356
r_angle_refined_deg1.634
r_mcangle_it1.242
r_mcbond_it1.215
r_angle_other_deg1.092
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg38.25
r_dihedral_angle_4_deg17.264
r_dihedral_angle_3_deg14.672
r_dihedral_angle_1_deg5.628
r_scangle_it3.056
r_scbond_it2.356
r_angle_refined_deg1.634
r_mcangle_it1.242
r_mcbond_it1.215
r_angle_other_deg1.092
r_chiral_restr0.336
r_symmetry_vdw_other0.295
r_nbd_refined0.235
r_mcbond_other0.226
r_symmetry_hbond_refined0.201
r_nbtor_refined0.179
r_nbd_other0.171
r_xyhbond_nbd_refined0.139
r_symmetry_vdw_refined0.12
r_nbtor_other0.087
r_bond_refined_d0.015
r_gen_planes_refined0.006
r_gen_planes_other0.002
r_bond_other_d0.001
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms790
Nucleic Acid Atoms
Solvent Atoms69
Heterogen Atoms

Software

Software
Software NamePurpose
DENZOdata reduction
SCALEPACKdata scaling
REFMACrefinement
PDB_EXTRACTdata extraction
HKL-2000data collection
HKL-2000data reduction
HKL-2000data scaling
PHASERphasing