X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION8293K2SO4, PEG 3350, pH 8.0, vapor diffusion, temperature 293K
Crystal Properties
Matthews coefficientSolvent content
1.9235.87

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 55.692α = 90
b = 58.708β = 90
c = 72.605γ = 90
Symmetry
Space GroupI 2 2 2

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDMARMOSAIC 325 mm CCD2006-11-30MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONSSRL BEAMLINE BL11-10.97945SSRLBL11-1

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.55097.80.04716.811.8195631913322
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
11.51.5595.70.53810.71866

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (All)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (All)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONTHROUGHOUT1.545.64195631900297997.80.2030.2030.2020.225RANDOM11.242
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
1.29-1.21-0.08
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg38.852
r_dihedral_angle_4_deg15.083
r_dihedral_angle_3_deg10.842
r_dihedral_angle_1_deg5.183
r_scangle_it1.823
r_mcangle_it1.397
r_angle_refined_deg1.289
r_scbond_it1.169
r_mcbond_it0.852
r_angle_other_deg0.814
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg38.852
r_dihedral_angle_4_deg15.083
r_dihedral_angle_3_deg10.842
r_dihedral_angle_1_deg5.183
r_scangle_it1.823
r_mcangle_it1.397
r_angle_refined_deg1.289
r_scbond_it1.169
r_mcbond_it0.852
r_angle_other_deg0.814
r_metal_ion_refined0.78
r_nbd_refined0.503
r_symmetry_vdw_other0.379
r_symmetry_vdw_refined0.364
r_nbd_other0.324
r_mcbond_other0.241
r_nbtor_refined0.208
r_symmetry_hbond_refined0.183
r_xyhbond_nbd_refined0.143
r_nbtor_other0.142
r_chiral_restr0.073
r_bond_refined_d0.011
r_bond_other_d0.007
r_gen_planes_refined0.004
r_gen_planes_other0.001
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms787
Nucleic Acid Atoms
Solvent Atoms86
Heterogen Atoms5

Software

Software
Software NamePurpose
DENZOdata reduction
SCALEPACKdata scaling
REFMACrefinement
PDB_EXTRACTdata extraction
HKL-2000data collection
HKL-2000data reduction
HKL-2000data scaling
PHASERphasing