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Manipulating the coupled folding and binding process drives affinity maturation in a protein-protein complex
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7 298 2.0 M ammonium sulfate, 0.1 M Tris-Cl pH 7.0, 0.3 % 1,6-diaminohexane, VAPOR DIFFUSION, HANGING DROP, temperature 298K
Crystal Properties Matthews coefficient Solvent content 3.17 61.18
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 96.69 α = 90 b = 96.69 β = 90 c = 91.84 γ = 120
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 4 2006-07-23 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON NSLS BEAMLINE X12B 0.9902 NSLS X12B
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2 50 97.6 0.059 33391 27415 2 2 33.9
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION THROUGHOUT 2.2 50 24792 1287 99.95 0.192 0.19 0.1858 0.233 0.2273 RANDOM 32.846
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.25 0.62 1.25 -1.87
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 39.044 r_dihedral_angle_3_deg 15.317 r_dihedral_angle_4_deg 10.075 r_dihedral_angle_1_deg 6.491 r_scangle_it 5.064 r_scbond_it 3.454 r_mcangle_it 2.291 r_angle_refined_deg 1.739 r_mcbond_it 1.421 r_symmetry_hbond_refined 0.347
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 39.044 r_dihedral_angle_3_deg 15.317 r_dihedral_angle_4_deg 10.075 r_dihedral_angle_1_deg 6.491 r_scangle_it 5.064 r_scbond_it 3.454 r_mcangle_it 2.291 r_angle_refined_deg 1.739 r_mcbond_it 1.421 r_symmetry_hbond_refined 0.347 r_nbtor_refined 0.305 r_nbd_refined 0.225 r_symmetry_vdw_refined 0.219 r_xyhbond_nbd_refined 0.138 r_chiral_restr 0.115 r_bond_refined_d 0.021 r_gen_planes_refined 0.009
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2752 Nucleic Acid Atoms Solvent Atoms 109 Heterogen Atoms 10
Software Software Software Name Purpose REFMAC refinement PDB_EXTRACT data extraction HKL-2000 data collection HKL-2000 data reduction HKL-2000 data scaling MOLREP phasing