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Crystal structure of uncharacterized protein Ism_01780 from Roseovarius nubinhibens ISM
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 7.5 294 0.1M HEPES, 0.2M Calcium chloride, 28% PEG 400, pH 7.5, VAPOR DIFFUSION, SITTING DROP, temperature 294K
Crystal Properties Matthews coefficient Solvent content 3.93 68.71
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 96.405 α = 90 b = 101.973 β = 90 c = 76.506 γ = 90
Symmetry Space Group P 21 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 77 CCD MAR CCD 165 mm 2007-12-05 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 31-ID 0.9796 APS 31-ID
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.75 50 90.7 0.14 3.2 3.2 20512 -0.5 87.74
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.75 2.85 98.5 0.86 0.45 2.9
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 2.75 20 17858 580 91.7 0.25668 0.25541 0.2562 0.29796 0.2953 RANDOM 78.104
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 2.36 -1.63 -0.73
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.355 r_dihedral_angle_3_deg 18.155 r_dihedral_angle_4_deg 16.714 r_scangle_it 13.513 r_scbond_it 9.625 r_mcangle_it 6.182 r_dihedral_angle_1_deg 5.47 r_mcbond_it 4.173 r_angle_refined_deg 1.024 r_nbtor_refined 0.298
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.355 r_dihedral_angle_3_deg 18.155 r_dihedral_angle_4_deg 16.714 r_scangle_it 13.513 r_scbond_it 9.625 r_mcangle_it 6.182 r_dihedral_angle_1_deg 5.47 r_mcbond_it 4.173 r_angle_refined_deg 1.024 r_nbtor_refined 0.298 r_xyhbond_nbd_refined 0.13 r_nbd_refined 0.12 r_symmetry_hbond_refined 0.111 r_symmetry_vdw_refined 0.093 r_chiral_restr 0.067 r_bond_refined_d 0.006 r_gen_planes_refined 0.003 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3204 Nucleic Acid Atoms Solvent Atoms 4 Heterogen Atoms 6
Software Software Software Name Purpose SHELXD phasing REFMAC refinement MAR345 data collection HKL-2000 data reduction HKL-2000 data scaling