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AR-NLS:Importin-alpha complex
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1EJY PDB ENTRY 1EJY
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 6.5 291 pH 6.5, VAPOR DIFFUSION, HANGING DROP, temperature 291K
Crystal Properties Matthews coefficient Solvent content 3.58 65.68
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 78.274 α = 90 b = 89.372 β = 90 c = 98.104 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 IMAGE PLATE MAR scanner 345 mm plate mirrors 2005-12-28 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU RUH3R 1.5418
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.576 21.393 98 0.066 0.066 8 5 2765 21477
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 2.6 2.74 88.1 0.262 0.262 2.9 4.6
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 1EJY 2.6 20.11 2765 19981 1454 98.61 0.18859 0.18568 0.1862 0.2289 0.2264 RANDOM 42.892
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -2.33 -2.02 4.35
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.864 r_dihedral_angle_4_deg 19.384 r_dihedral_angle_3_deg 16.271 r_dihedral_angle_1_deg 5.37 r_mcangle_it 4.906 r_scangle_it 4.88 r_mcbond_it 3.663 r_scbond_it 3.345 r_angle_refined_deg 1.293 r_angle_other_deg 0.91
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.864 r_dihedral_angle_4_deg 19.384 r_dihedral_angle_3_deg 16.271 r_dihedral_angle_1_deg 5.37 r_mcangle_it 4.906 r_scangle_it 4.88 r_mcbond_it 3.663 r_scbond_it 3.345 r_angle_refined_deg 1.293 r_angle_other_deg 0.91 r_mcbond_other 0.596 r_nbd_refined 0.234 r_nbtor_refined 0.188 r_nbd_other 0.181 r_symmetry_vdw_other 0.151 r_xyhbond_nbd_refined 0.139 r_symmetry_vdw_refined 0.122 r_symmetry_hbond_refined 0.103 r_nbtor_other 0.088 r_chiral_restr 0.067 r_bond_refined_d 0.012 r_gen_planes_refined 0.004 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3363 Nucleic Acid Atoms Solvent Atoms 33 Heterogen Atoms
Software Software Software Name Purpose MOSFLM data reduction SCALA data scaling REFMAC refinement PDB_EXTRACT data extraction MAR345dtb data collection REFMAC phasing