☰ Navigation Tabs
Crystal structure of methyltransferase domain of human Histone-lysine N-methyltransferase SETMAR
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 5.5 298 25% PEG 3350, 0.2 M Ammonium acetate, 0.1 M Bis-Tris pH 5.5, VAPOR DIFFUSION, SITTING DROP, temperature 298K
Crystal Properties Matthews coefficient Solvent content 1.87 34.07
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 41.396 α = 90 b = 67.827 β = 105.93 c = 44.637 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315 2007-12-05 M MAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 19-ID 0.9793143, 1.2832396 APS 19-ID
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.59 42.91 99.8 0.066 27 4.9 31726 31726
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.59 1.66 98.5 0.461 2.5 4.4 3116
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 1.59 42.91 30096 30096 1606 98.73 0.15741 0.15741 0.15516 0.1525 0.19889 0.1972 RANDOM 20.693
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.59 0.33 -0.52 0.12
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.774 r_dihedral_angle_4_deg 14.138 r_dihedral_angle_3_deg 12.7 r_dihedral_angle_1_deg 6.461 r_scangle_it 4.437 r_scbond_it 2.99 r_mcangle_it 2.294 r_angle_refined_deg 2.057 r_mcbond_it 1.466 r_nbtor_refined 0.327
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.774 r_dihedral_angle_4_deg 14.138 r_dihedral_angle_3_deg 12.7 r_dihedral_angle_1_deg 6.461 r_scangle_it 4.437 r_scbond_it 2.99 r_mcangle_it 2.294 r_angle_refined_deg 2.057 r_mcbond_it 1.466 r_nbtor_refined 0.327 r_symmetry_vdw_refined 0.253 r_nbd_refined 0.214 r_symmetry_hbond_refined 0.206 r_xyhbond_nbd_refined 0.153 r_chiral_restr 0.149 r_bond_refined_d 0.021 r_gen_planes_refined 0.011 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2088 Nucleic Acid Atoms Solvent Atoms 304 Heterogen Atoms 42
Software Software Software Name Purpose REFMAC refinement ADSC data collection HKL-3000 data reduction HKL-3000 data scaling SHELXD phasing