X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP6.5298l8% PEG 8K, 0.2 M ZnAc, 0.1 M Na Cacodylate, pH 6.5, VAPOR DIFFUSION, HANGING DROP, temperature 298K
Crystal Properties
Matthews coefficientSolvent content
2.1843.49

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 44.29α = 90
b = 72.84β = 90
c = 95.02γ = 90
Symmetry
Space GroupP 21 21 21

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-rayIMAGE PLATERIGAKU RAXIS IVmirrors2007-05-13MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1ROTATING ANODERIGAKU MICROMAX-0071.5418

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.815.8799.80.03426.65.5929142
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
11.81.8698.30.15274.312836

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONTHROUGHOUT1.8828807146399.820.2080.2050.262RANDOM24.423
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
1.45-1.14-0.31
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg38.387
r_dihedral_angle_3_deg15.05
r_dihedral_angle_1_deg6.565
r_dihedral_angle_4_deg5.472
r_scangle_it4.127
r_scbond_it2.936
r_mcangle_it1.808
r_angle_refined_deg1.709
r_mcbond_it1.192
r_symmetry_vdw_refined0.452
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg38.387
r_dihedral_angle_3_deg15.05
r_dihedral_angle_1_deg6.565
r_dihedral_angle_4_deg5.472
r_scangle_it4.127
r_scbond_it2.936
r_mcangle_it1.808
r_angle_refined_deg1.709
r_mcbond_it1.192
r_symmetry_vdw_refined0.452
r_symmetry_hbond_refined0.334
r_nbtor_refined0.299
r_nbd_refined0.217
r_xyhbond_nbd_refined0.197
r_chiral_restr0.135
r_symmetry_metal_ion_refined0.104
r_metal_ion_refined0.02
r_bond_refined_d0.019
r_gen_planes_refined0.007
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms2394
Nucleic Acid Atoms
Solvent Atoms293
Heterogen Atoms7

Software

Software
Software NamePurpose
d*TREKdata scaling
d*TREKdata reduction
REFMACrefinement
PDB_EXTRACTdata extraction