3BEH

Structure of a Bacterial Cyclic Nucleotide Regulated Ion Channel


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, SITTING DROP6298PEG2000, pH 6.0, temperature 298K, VAPOR DIFFUSION, SITTING DROP
Crystal Properties
Matthews coefficientSolvent content
5.3777.09

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 282.73α = 90
b = 282.73β = 90
c = 105.46γ = 120
Symmetry
Space GroupH 3

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-rayCCD2006-09-15MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONNSLS BEAMLINE X29A1.08NSLSX29A

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
13.148.4556604
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
13.13.18

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONTHROUGHOUT3.148.4556604197099.310.2760.2760.286RANDOM61.192
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg28.985
r_dihedral_angle_3_deg15.606
r_dihedral_angle_4_deg10.55
r_dihedral_angle_1_deg3.881
r_angle_refined_deg0.898
r_scangle_it0.327
r_nbtor_refined0.291
r_nbd_refined0.18
r_scbond_it0.176
r_symmetry_vdw_refined0.131
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg28.985
r_dihedral_angle_3_deg15.606
r_dihedral_angle_4_deg10.55
r_dihedral_angle_1_deg3.881
r_angle_refined_deg0.898
r_scangle_it0.327
r_nbtor_refined0.291
r_nbd_refined0.18
r_scbond_it0.176
r_symmetry_vdw_refined0.131
r_mcangle_it0.13
r_metal_ion_refined0.126
r_xyhbond_nbd_refined0.108
r_mcbond_it0.069
r_chiral_restr0.051
r_bond_refined_d0.006
r_gen_planes_refined0.002
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms6581
Nucleic Acid Atoms
Solvent Atoms23
Heterogen Atoms69

Software

Software
Software NamePurpose
REFMACrefinement
XSCALEdata scaling