X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROPVAPOR DIFFUSION, HANGING DROP
Crystal Properties
Matthews coefficientSolvent content
2.1542.7

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 46.825α = 90
b = 46.825β = 90
c = 111.233γ = 90
Symmetry
Space GroupP 43

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-rayCCDNOIR-1MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONALS BEAMLINE 4.2.21.38ALS4.2.2

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
1233.1199.90.068103.6216219
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
122.0799.90.3962.83.091617

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT23016182163399.930.2190.2150.258RANDOM39.492
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
0.550.55-1.1
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg28.352
r_dihedral_angle_4_deg11.839
r_dihedral_angle_3_deg11.211
r_scangle_it3.335
r_dihedral_angle_1_deg2.83
r_mcangle_it2.349
r_scbond_it2.329
r_angle_refined_deg1.558
r_mcbond_it1.49
r_nbtor_refined0.278
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg28.352
r_dihedral_angle_4_deg11.839
r_dihedral_angle_3_deg11.211
r_scangle_it3.335
r_dihedral_angle_1_deg2.83
r_mcangle_it2.349
r_scbond_it2.329
r_angle_refined_deg1.558
r_mcbond_it1.49
r_nbtor_refined0.278
r_nbd_refined0.168
r_xyhbond_nbd_refined0.115
r_symmetry_vdw_refined0.102
r_chiral_restr0.093
r_symmetry_hbond_refined0.089
r_bond_refined_d0.006
r_gen_planes_refined0.002
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms1962
Nucleic Acid Atoms
Solvent Atoms90
Heterogen Atoms43

Software

Software
Software NamePurpose
d*TREKdata scaling
MOLREPphasing
REFMACrefinement
PDB_EXTRACTdata extraction
CrystalCleardata collection
d*TREKdata reduction