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Structure of the eEF2-ExoA(E546H)-NAD+ complex
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1ZM9 PDB entry 1ZM9
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 7.2 293 7% PEG-10000, 3.5mM MPD, 100 mM HEPES, pH 7.2, VAPOR DIFFUSION, SITTING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 2.98 58.75
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 327.57 α = 90 b = 68.46 β = 103.04 c = 189.99 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 210 Si(111) double-crystal monochromator 2006-07-09 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 17-ID 1.0000 APS 17-ID
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.35 25 98.4 0.144 9.07 4.2 171813 169084 -3 39.284
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 2.35 2.4 81.9 0.698 1.6 2.7 10376
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION THROUGHOUT PDB entry 1ZM9 2.35 25 171592 169070 3701 98.53 0.215 0.215 0.215 0.2096 0.257 Test set chosen from 1ZM9 and extended to 2.35A 71.47
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -1.484 -2.325 4.304 -2.82
RMS Deviations Key Refinement Restraint Deviation f_dihedral_angle_d 14.725 f_nbd_refined 4.119 f_angle_d 0.547 f_chiral_restr 0.036 f_bond_d 0.002 f_plane_restr 0.002
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 24002 Nucleic Acid Atoms Solvent Atoms 548 Heterogen Atoms 132
Software Software Software Name Purpose XSCALE data processing PHENIX refinement PDB_EXTRACT data extraction HKL-2000 data collection XDS data reduction XDS data scaling MOLREP phasing