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Crystal structure of the PhiH1 repressor-like protein from Haloarcula marismortui
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 4.4 289 1.26M Ammonium sulfate, 0.1M Acetate pH 4.5, 0.2M Sodium chloride, pH 4.4, VAPOR DIFFUSION, SITTING DROP, temperature 289K
Crystal Properties Matthews coefficient Solvent content 2.31 46.87
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 48.392 α = 90 b = 53.483 β = 90 c = 89.343 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315 Mirrors 2007-10-12 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 19-ID 0.9794 APS 19-ID
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.12 34.29 90.5 0.09 11.5 13.8 12752 12752 48.823
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 2.12 2.2 64.7 0.319 5.4 10 888
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 2.12 34.29 11931 615 91.63 0.196 0.196 0.194 0.1904 0.228 0.2205 RANDOM 61.515
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 2.59 -1.16 -1.43
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.124 r_dihedral_angle_4_deg 21.762 r_dihedral_angle_3_deg 18.398 r_scangle_it 18.378 r_scbond_it 18.177 r_mcangle_it 11.747 r_mcbond_it 10.291 r_dihedral_angle_1_deg 4.607 r_angle_refined_deg 1.178 r_nbtor_refined 0.321
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.124 r_dihedral_angle_4_deg 21.762 r_dihedral_angle_3_deg 18.398 r_scangle_it 18.378 r_scbond_it 18.177 r_mcangle_it 11.747 r_mcbond_it 10.291 r_dihedral_angle_1_deg 4.607 r_angle_refined_deg 1.178 r_nbtor_refined 0.321 r_symmetry_vdw_refined 0.298 r_symmetry_hbond_refined 0.264 r_nbd_refined 0.23 r_xyhbond_nbd_refined 0.157 r_chiral_restr 0.075 r_bond_refined_d 0.01 r_gen_planes_refined 0.005 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1492 Nucleic Acid Atoms Solvent Atoms 55 Heterogen Atoms 10
Software Software Software Name Purpose REFMAC refinement SBC-Collect data collection HKL-3000 data collection HKL-3000 data reduction HKL-3000 data scaling HKL-3000 phasing SHELXCD phasing SHELXD phasing MLPHARE phasing RESOLVE phasing ARP/wARP model building