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Crystal Structure of ADAMTS4 (apo form)
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2RJP
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP VAPOR DIFFUSION, HANGING DROP
Crystal Properties Matthews coefficient Solvent content 2.91 57.71
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 128.33 α = 90 b = 84.315 β = 112.23 c = 150.146 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ALS BEAMLINE 5.0.2 1.0 ALS 5.0.2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.8 50 0.12 5.5 72528
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2rjp 2.8 50 72512 3658 98.63 0.257 0.254 0.312 RANDOM 41.852
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -4.59 -0.86 8.05 -4.11
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.863 r_dihedral_angle_4_deg 17.709 r_dihedral_angle_3_deg 16.361 r_dihedral_angle_1_deg 6.096 r_scangle_it 1.261 r_angle_refined_deg 1.181 r_scbond_it 0.771 r_mcangle_it 0.59 r_mcbond_it 0.329 r_nbtor_refined 0.303
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.863 r_dihedral_angle_4_deg 17.709 r_dihedral_angle_3_deg 16.361 r_dihedral_angle_1_deg 6.096 r_scangle_it 1.261 r_angle_refined_deg 1.181 r_scbond_it 0.771 r_mcangle_it 0.59 r_mcbond_it 0.329 r_nbtor_refined 0.303 r_symmetry_vdw_refined 0.259 r_nbd_refined 0.234 r_symmetry_hbond_refined 0.178 r_xyhbond_nbd_refined 0.164 r_metal_ion_refined 0.122 r_chiral_restr 0.079 r_bond_refined_d 0.008 r_gen_planes_refined 0.003
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 17286 Nucleic Acid Atoms Solvent Atoms 299 Heterogen Atoms 24
Software Software Software Name Purpose REFMAC refinement PDB_EXTRACT data extraction ADSC data collection MOSFLM data reduction SCALA data scaling AMoRE phasing