X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP8.529330% PEG4000, 0.2M Lithium sulfate, 0.1M Tris-HCl, pH 8.5, VAPOR DIFFUSION, HANGING DROP, temperature 293K
Crystal Properties
Matthews coefficientSolvent content
2.2144.29

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 39.011α = 90
b = 120.328β = 106.55
c = 53.322γ = 90
Symmetry
Space GroupP 1 21 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray95CCDADSC QUANTUM 2102009-01-30MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONPHOTON FACTORY BEAMLINE AR-NW12APhoton FactoryAR-NW12A

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.2838.95477.70.2251.7213922139233
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
12.282.3877.7

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Cut-off Sigma (F)Number Reflections (All)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT4PTI2.2838.953213921549982476.30.168670.162640.2736RANDOM19.941
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-0.12-0.170.16-0.14
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg20.988
r_dihedral_angle_3_deg17.446
r_dihedral_angle_4_deg15.997
r_dihedral_angle_1_deg8.466
r_scangle_it5.989
r_scbond_it4.409
r_mcangle_it2.679
r_angle_refined_deg2.184
r_mcbond_it1.695
r_symmetry_hbond_refined0.577
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg20.988
r_dihedral_angle_3_deg17.446
r_dihedral_angle_4_deg15.997
r_dihedral_angle_1_deg8.466
r_scangle_it5.989
r_scbond_it4.409
r_mcangle_it2.679
r_angle_refined_deg2.184
r_mcbond_it1.695
r_symmetry_hbond_refined0.577
r_nbtor_refined0.323
r_xyhbond_nbd_refined0.245
r_symmetry_vdw_refined0.242
r_nbd_refined0.227
r_chiral_restr0.138
r_bond_refined_d0.025
r_gen_planes_refined0.01
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms3526
Nucleic Acid Atoms
Solvent Atoms328
Heterogen Atoms65

Software

Software
Software NamePurpose
HKL-2000data collection
MOLREPphasing
REFMACrefinement
DENZOdata reduction
SCALEPACKdata scaling