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Glycine ethyl ester shielding on the aromatic surfaces of lysozyme: Implication for suppression of protein aggregation
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 Batch 4.5 293 0.05M sodium acetate, 0.8M sodium chloride, pH 4.5, Batch, temperature 293K
Crystal Properties Matthews coefficient Solvent content 1.9 35.42
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 76.744 α = 90 b = 76.744 β = 90 c = 37.078 γ = 90
Symmetry Space Group P 43 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 IMAGE PLATE RIGAKU RAXIS V mirrors 2010-12-08 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SPRING-8 BEAMLINE BL32B2 1.000 SPring-8 BL32B2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.17 40 100 35863
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.17 1.21 99.9
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.17 33.39 35863 1883 99.56 0.15234 0.15122 0.1487 0.17377 0.1755 RANDOM 13.794
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.06 -0.06 0.11
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.372 r_dihedral_angle_4_deg 18.145 r_dihedral_angle_3_deg 13.323 r_sphericity_free 9.939 r_sphericity_bonded 5.98 r_dihedral_angle_1_deg 5.839 r_scangle_it 4.77 r_scbond_it 3.507 r_mcangle_it 2.766 r_rigid_bond_restr 1.989
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.372 r_dihedral_angle_4_deg 18.145 r_dihedral_angle_3_deg 13.323 r_sphericity_free 9.939 r_sphericity_bonded 5.98 r_dihedral_angle_1_deg 5.839 r_scangle_it 4.77 r_scbond_it 3.507 r_mcangle_it 2.766 r_rigid_bond_restr 1.989 r_mcbond_it 1.873 r_angle_refined_deg 1.59 r_symmetry_vdw_refined 0.351 r_nbtor_refined 0.309 r_nbd_refined 0.233 r_symmetry_hbond_refined 0.174 r_xyhbond_nbd_refined 0.173 r_chiral_restr 0.119 r_metal_ion_refined 0.097 r_bond_refined_d 0.015 r_gen_planes_refined 0.009 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1001 Nucleic Acid Atoms Solvent Atoms 161 Heterogen Atoms 11
Software Software Software Name Purpose HKL-2000 data collection MOLREP phasing PHENIX refinement HKL-2000 data reduction HKL-2000 data scaling REFMAC refinement