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Crystal structure of CK2alpha
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2ZJW
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 8 277 25% ethyleneglycol, pH 8, VAPOR DIFFUSION, SITTING DROP, temperature 277K
Crystal Properties Matthews coefficient Solvent content 2 38.39
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 51.642 α = 90 b = 78.42 β = 90 c = 79.821 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD RAYONIX MX225HE 2010-02-22 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SPRING-8 BEAMLINE BL44XU 1.0 SPring-8 BL44XU
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.6 55.94 99.9 43515 43472
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2ZJW 1.6 55.94 41212 2181 99.9 0.16264 0.16081 0.16 0.1969 0.1957 RANDOM 17.147
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.25 -0.37 0.62
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.311 r_dihedral_angle_4_deg 21.314 r_dihedral_angle_3_deg 13.325 r_dihedral_angle_1_deg 6.226 r_scangle_it 5.978 r_scbond_it 3.668 r_mcangle_it 2.485 r_angle_refined_deg 2.302 r_mcbond_it 1.51 r_chiral_restr 0.177
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.311 r_dihedral_angle_4_deg 21.314 r_dihedral_angle_3_deg 13.325 r_dihedral_angle_1_deg 6.226 r_scangle_it 5.978 r_scbond_it 3.668 r_mcangle_it 2.485 r_angle_refined_deg 2.302 r_mcbond_it 1.51 r_chiral_restr 0.177 r_bond_refined_d 0.028 r_gen_planes_refined 0.014 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2816 Nucleic Acid Atoms Solvent Atoms 413 Heterogen Atoms 44
Software Software Software Name Purpose MOLREP phasing REFMAC refinement HKL-2000 data reduction HKL-2000 data scaling