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X-ray crystal structure of human anaplastic lymphoma kinase in complex with CH5424802
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1GAG PDB ENTRY 1GAG
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 5.5 277 PEG 550 MME, maleic acid, pH 5.5, VAPOR DIFFUSION, SITTING DROP, temperature 277K
Crystal Properties Matthews coefficient Solvent content 2.06 40.29
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 52.063 α = 90 b = 58.1 β = 90 c = 105.739 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 90 PIXEL DECTRIS PILATUS 6M 2010-07-14 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SLS BEAMLINE X06SA 1.0000 SLS X06SA
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.75 50 99.9 0.068 17.06 33074 -3 31.997
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.75 1.86 100 0.849 0.927 2.5
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 1GAG 1.75 46.71 33073 934 99.93 0.1703 0.1692 0.1807 0.2059 0.2183 RANDOM 34.699
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.29 -0.65 0.94
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.409 r_dihedral_angle_4_deg 19.06 r_dihedral_angle_3_deg 12.762 r_scangle_it 6.638 r_dihedral_angle_1_deg 5.275 r_scbond_it 4.39 r_mcangle_it 3.103 r_mcbond_it 1.874 r_angle_refined_deg 1.36 r_angle_other_deg 0.874
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.409 r_dihedral_angle_4_deg 19.06 r_dihedral_angle_3_deg 12.762 r_scangle_it 6.638 r_dihedral_angle_1_deg 5.275 r_scbond_it 4.39 r_mcangle_it 3.103 r_mcbond_it 1.874 r_angle_refined_deg 1.36 r_angle_other_deg 0.874 r_mcbond_other 0.58 r_chiral_restr 0.078 r_bond_refined_d 0.012 r_gen_planes_refined 0.006 r_gen_planes_other 0.002 r_bond_other_d 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2354 Nucleic Acid Atoms Solvent Atoms 236 Heterogen Atoms 52
Software Software Software Name Purpose XSCALE data scaling REFMAC refinement PDB_EXTRACT data extraction XDS data reduction PHASER phasing