Solution NMR structure of de novo designed tau peptide binding protein TBPHF6-11
SOLUTION NMR
| NMR Experiment | ||||||||
|---|---|---|---|---|---|---|---|---|
| Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
| 1 | 2D 1H-15N HSQC | 590 uM [U-100% 13C; U-100% 15N] TBPHF6-11 | 90% H2O/10% D2O | 100 mM | 6.5 | 1 atm | 298 | Bruker AVANCE III HD 800 |
| 2 | 3D HNCA | 590 uM [U-100% 13C; U-100% 15N] TBPHF6-11 | 90% H2O/10% D2O | 100 mM | 6.5 | 1 atm | 298 | Bruker AVANCE III HD 800 |
| 3 | 3D HNCACB | 590 uM [U-100% 13C; U-100% 15N] TBPHF6-11 | 90% H2O/10% D2O | 100 mM | 6.5 | 1 atm | 298 | Bruker AVANCE III HD 800 |
| 4 | 3D HNCO | 590 uM [U-100% 13C; U-100% 15N] TBPHF6-11 | 90% H2O/10% D2O | 100 mM | 6.5 | 1 atm | 298 | Bruker AVANCE III HD 800 |
| 5 | 3D CBCA(CO)NH | 590 uM [U-100% 13C; U-100% 15N] TBPHF6-11 | 90% H2O/10% D2O | 100 mM | 6.5 | 1 atm | 298 | Bruker AVANCE III HD 800 |
| 6 | 3D 1H-15N NOESY | 590 uM [U-100% 13C; U-100% 15N] TBPHF6-11 | 90% H2O/10% D2O | 100 mM | 6.5 | 1 atm | 298 | Bruker AVANCE III HD 800 |
| NMR Spectrometer Information | |||
|---|---|---|---|
| Spectrometer | Manufacturer | Model | Field Strength |
| 1 | Bruker | AVANCE III HD | 800 |
| NMR Refinement | ||
|---|---|---|
| Method | Details | Software |
| molecular dynamics | GROMACS | |
| NMR Ensemble Information | |
|---|---|
| Conformer Selection Criteria | structures with the lowest energy |
| Conformers Calculated Total Number | 30000 |
| Conformers Submitted Total Number | 10 |
| Representative Model | 1 (lowest energy) |
| Computation: NMR Software | ||||
|---|---|---|---|---|
| # | Classification | Version | Software Name | Author |
| 1 | chemical shift assignment | NMRFAM-SPARKY | Lee, Markley | |
| 2 | structure calculation | Rosetta | DiMaio, Leaver-Fay, Bradley, Baker and Andre | |
| 3 | processing | NMRPipe | Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax | |
| 4 | refinement | GROMACS | Lindahl | |
