☰ Navigation Tabs
Small Molecule Inhibitors of Cholesterol Sulfotransferase as Immunomodulatory Agents
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1Q1Z
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 279 0.8 M sodium citrate dihydrate, 0.1 M Imidazole at pH 8.3, 4 mM 3-phosphoadenosine 5-phosphosulfate (PAP)
Crystal Properties Matthews coefficient Solvent content 4.43 72.26
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 74.806 α = 90 b = 74.806 β = 90 c = 249.388 γ = 90
Symmetry Space Group P 41 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 81 PIXEL DECTRIS EIGER X 16M 2025-06-19 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON CHESS BEAMLINE 7B2 0.88570 CHESS 7B2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.5 48.696 100 0.999 17.7 15.9 25494
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.5 2.508 0.532
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Cut-off Sigma (F) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT FREE R-VALUE 2.5 48.696 1.34 25491 1232 99.95 0.1909 0.1891 0.1873 0.2258 0.2236
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
RMS Deviations Key Refinement Restraint Deviation f_dihedral_angle_d 17.027 f_angle_d 1.051 f_chiral_restr 0.053 f_bond_d 0.008 f_plane_restr 0.008
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2366 Nucleic Acid Atoms Solvent Atoms 60 Heterogen Atoms 58
Software Software Software Name Purpose PHENIX refinement PDB_EXTRACT data extraction autoPROC data processing Aimless data scaling PHASER phasing