35UC | pdb_000035uc

X-RAY DIFFRACTION

Initial Refinement Model(s)
Type	Source	Accession Code	Details
experimental model	Other		proprietary model

Crystalization Experiments
ID	Method	pH	Temperature	Details
1	VAPOR DIFFUSION, HANGING DROP	7.5	293	HEPES; PEG8000

Crystal Properties
Matthews coefficient	Solvent content
2.36	47.86

Symmetry
Space Group	P 21 21 21

Diffraction Experiment
ID #	Crystal ID	Scattering Type	Data Collection Temperature	Detector	Detector Type	Details	Collection Date	Monochromator	Protocol
1	1	x-ray	100	PIXEL	DECTRIS EIGER X 16M		2022-04-06	M	SINGLE WAVELENGTH

Radiation Source
ID #	Source	Type	Wavelength List	Synchrotron Site	Beamline
1	SYNCHROTRON	SLS BEAMLINE X10SA	1.0000	SLS	X10SA

Overall
ID #	Resolution (High)	Resolution (Low)	Percent Possible (Observed)	R Merge I (Observed)	Rrim I (All)	Rpim I (All)	CC (Half)	Net I Over Average Sigma (I)	Redundancy	Number Reflections (All)	Number Reflections (Observed)	Observed Criterion Sigma (F)	Observed Criterion Sigma (I)	B (Isotropic) From Wilson Plot
1	2.328	62.962	95.6	0.1311	0.1413	0.0516	0.993	10.28	7.42		15538

Highest Resolution Shell
ID #	Resolution (High)	Resolution (Low)	Percent Possible (All)	Percent Possible (Observed)	R Merge I (Observed)	Rrim I (All)	Rpim I (All)	CC (Half)	Mean I Over Sigma (Observed)	Redundancy	Number Unique Reflections (All)
1	2.328	2.368	100		1.5088	1.6193	0.5796	0.635	1.37	7.57

Statistics
Diffraction ID	Structure Solution Method	Cross Validation method	Resolution (High)	Resolution (Low)	Number Reflections (Observed)	Number Reflections (R-Free)	Percent Reflections (Observed)	R-Factor (All)	R-Work (Depositor)	R-Work (DCC)	R-Free (Depositor)	R-Free (DCC)	Mean Isotropic B
X-RAY DIFFRACTION	MOLECULAR REPLACEMENT	FREE R-VALUE	2.328	62.962	15431	1140	94.925	0.231	0.2264	0.2304	0.2953	0.2981	49.918

Temperature Factor Modeling
Anisotropic B[1][1]	Anisotropic B[1][2]	Anisotropic B[1][3]	Anisotropic B[2][2]	Anisotropic B[2][3]	Anisotropic B[3][3]
3.327			-2.941		-0.386

RMS Deviations
Key	Refinement Restraint Deviation
r_dihedral_angle_2_deg	31.174
r_dihedral_angle_3_deg	13.922
r_dihedral_angle_4_deg	11.47
r_dihedral_angle_1_deg	6.739
r_lrange_it	5.681
r_lrange_other	5.667
r_mcangle_it	4.011
r_mcangle_other	4.01
r_scangle_it	3.446
r_scangle_other	3.445

RMS Deviations
Key	Refinement Restraint Deviation
r_dihedral_angle_2_deg	31.174
r_dihedral_angle_3_deg	13.922
r_dihedral_angle_4_deg	11.47
r_dihedral_angle_1_deg	6.739
r_lrange_it	5.681
r_lrange_other	5.667
r_mcangle_it	4.011
r_mcangle_other	4.01
r_scangle_it	3.446
r_scangle_other	3.445
r_mcbond_other	2.371
r_mcbond_it	2.37
r_scbond_it	1.997
r_scbond_other	1.996
r_angle_refined_deg	1.346
r_angle_other_deg	1.094
r_symmetry_xyhbond_nbd_refined	0.18
r_nbd_refined	0.157
r_nbtor_refined	0.153
r_symmetry_nbd_other	0.145
r_xyhbond_nbd_refined	0.135
r_nbd_other	0.128
r_symmetry_nbd_refined	0.088
r_symmetry_nbtor_other	0.073
r_chiral_restr	0.05
r_gen_planes_refined	0.004
r_bond_refined_d	0.003
r_bond_other_d	0.002
r_gen_planes_other	0.002

Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms	Number
Protein Atoms	2521
Nucleic Acid Atoms
Solvent Atoms	65
Heterogen Atoms	27

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.