☰ Navigation Tabs
MurJ (MviN) extracellular domain
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details in silico model AlphaFold
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 293 Ammonium Sulfate
Crystal Properties Matthews coefficient Solvent content 2 38.6
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 34.134 α = 90 b = 50.71 β = 103.25 c = 73.033 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M 2024-04-25 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID30B 0.965459 ESRF ID30B
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.43 41.28 93.83 0.575 1.3 1.7 59490 15.02
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.43 1.481 0.44
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT FREE R-VALUE 1.43 41.28 37557 1866 83.434 0.177 0.1743 0.1771 0.2317 0.2341 14.193
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.85 -0.14 -0.305 -0.431
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_6_deg 14.814 r_lrange_it 14.429 r_dihedral_angle_3_deg 11.785 r_lrange_other 10.999 r_dihedral_angle_1_deg 7.101 r_scangle_it 4.901 r_scangle_other 4.865 r_mcangle_it 4.071 r_mcangle_other 4.071 r_dihedral_angle_2_deg 3.447
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_6_deg 14.814 r_lrange_it 14.429 r_dihedral_angle_3_deg 11.785 r_lrange_other 10.999 r_dihedral_angle_1_deg 7.101 r_scangle_it 4.901 r_scangle_other 4.865 r_mcangle_it 4.071 r_mcangle_other 4.071 r_dihedral_angle_2_deg 3.447 r_scbond_it 3.352 r_scbond_other 3.314 r_rigid_bond_restr 2.82 r_mcbond_it 2.697 r_mcbond_other 2.693 r_angle_refined_deg 1.575 r_angle_other_deg 0.544 r_symmetry_xyhbond_nbd_refined 0.319 r_nbd_refined 0.234 r_xyhbond_nbd_refined 0.214 r_symmetry_nbd_refined 0.206 r_symmetry_nbd_other 0.199 r_nbd_other 0.182 r_nbtor_refined 0.165 r_metal_ion_refined 0.15 r_symmetry_xyhbond_nbd_other 0.118 r_symmetry_nbtor_other 0.088 r_chiral_restr 0.082 r_xyhbond_nbd_other 0.016 r_bond_refined_d 0.007 r_gen_planes_refined 0.007 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2158 Nucleic Acid Atoms Solvent Atoms 423 Heterogen Atoms 12
Software Software Software Name Purpose REFMAC refinement autoPROC data reduction Aimless data scaling PHASER phasing