☰ Navigation Tabs
Chlororaphen Synthase from Pseudomonas chlororaphis (Pc-ChloS) in complex with prechlororaphen thiolopyrophosphate (a-PCSPP)
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 33CU Chlororaphen Synthase from Pseudomonas chlororaphis (Pc-ChloS) in complex with thiopyrophosphate and BisTris-buffer
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 8.2 293 1 M Na/K-phosphate
Crystal Properties Matthews coefficient Solvent content 2.23 44.79
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 49.15 α = 105.25 b = 52.29 β = 101.22 c = 71.21 γ = 93.39
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS EIGER X 16M 2026-05-03 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON PETRA III, EMBL c/o DESY BEAMLINE P13 (MX1) 0.9393 PETRA III, EMBL c/o DESY P13 (MX1)
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.9 30 97.9 0.106 8.5 5.2 51470
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.9 2 96.2 0.824 2.1 5.3
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.9 30 48882 2573 97.93 0.18595 0.18371 0.1918 0.22221 0.2303 RANDOM 30.032
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -1.27 0.22 -1.5 1.14 -0.17 0.69
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.984 r_dihedral_angle_4_deg 19.89 r_dihedral_angle_3_deg 13.486 r_dihedral_angle_1_deg 5.727 r_long_range_B_refined 2.714 r_long_range_B_other 2.654 r_mcangle_it 1.784 r_mcangle_other 1.784 r_scangle_other 1.614 r_angle_refined_deg 1.261
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.984 r_dihedral_angle_4_deg 19.89 r_dihedral_angle_3_deg 13.486 r_dihedral_angle_1_deg 5.727 r_long_range_B_refined 2.714 r_long_range_B_other 2.654 r_mcangle_it 1.784 r_mcangle_other 1.784 r_scangle_other 1.614 r_angle_refined_deg 1.261 r_mcbond_it 1.256 r_mcbond_other 1.255 r_scbond_it 1.193 r_scbond_other 1.193 r_angle_other_deg 1.174 r_rigid_bond_restr 0.451 r_chiral_restr 0.058 r_gen_planes_refined 0.004 r_bond_refined_d 0.003 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 5129 Nucleic Acid Atoms Solvent Atoms 217 Heterogen Atoms 103
Software Software Software Name Purpose REFMAC refinement PDB_EXTRACT data extraction XDS data reduction XSCALE data scaling PHASER phasing