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PARP9 Macro Domain 2 P347G mutant, Free form
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 9QYF
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 7 293 0.1 M NPS, 0.1 M Imidazole/MES buffer, 12.5% v/v MPD; 12.5% PEG 1000; 12.5% w/v PEG 3350
Crystal Properties Matthews coefficient Solvent content 2.34 47.32
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 53.988 α = 90 b = 73.917 β = 117.26 c = 58.432 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M 2026-05-13 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE MASSIF-1 0.9655 ESRF MASSIF-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.9 73.92 100 0.999 11.8 6.9 32263
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.9 1.94 0.746
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.9 52 30613 1628 99.98 0.18603 0.18435 0.1945 0.21754 0.2272 RANDOM 45.263
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.06 -0.48 -2.26 1.11
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_3_deg 14.627 r_dihedral_angle_2_deg 14.026 r_long_range_B_refined 7.355 r_long_range_B_other 7.354 r_dihedral_angle_1_deg 6.537 r_scangle_other 5.923 r_scbond_it 4.013 r_scbond_other 3.991 r_mcangle_it 3.444 r_mcangle_other 3.443
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_3_deg 14.627 r_dihedral_angle_2_deg 14.026 r_long_range_B_refined 7.355 r_long_range_B_other 7.354 r_dihedral_angle_1_deg 6.537 r_scangle_other 5.923 r_scbond_it 4.013 r_scbond_other 3.991 r_mcangle_it 3.444 r_mcangle_other 3.443 r_mcbond_it 2.39 r_mcbond_other 2.388 r_angle_refined_deg 1.752 r_angle_other_deg 0.556 r_chiral_restr 0.081 r_bond_refined_d 0.008 r_gen_planes_refined 0.007 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_dihedral_angle_4_deg r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2893 Nucleic Acid Atoms Solvent Atoms 86 Heterogen Atoms 32
Software Software Software Name Purpose REFMAC refinement PDB_EXTRACT data extraction DIALS data reduction Aimless data scaling MOLREP phasing