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Herpes simplex virus 2 delta28-73 glycoprotein C ectodomain in complex with C3b
Refinement RMS Deviations Key Refinement Restraint Deviation f_dihedral_angle_d 4.26 f_angle_d 0.561 f_chiral_restr 0.047 f_bond_d 0.004 f_plane_restr 0.004
Sample Glycoprotein C of Herpes Simplex Virus, domains 1 and 2 with human complement protein C3b. Sample Components Herpes simplex virus 2, delta28-73 glycoprotein C ectodomain Complement human protein C3b
Specimen Preparation Sample Aggregation State PARTICLE Vitrification Instrument Cryogen Name ETHANE Sample Vitrification Details
3D Reconstruction Reconstruction Method SINGLE PARTICLE Number of Particles 466599 Reported Resolution (Å) 3.5 Resolution Method FSC 0.143 CUT-OFF Other Details Refinement Type Symmetry Type POINT
Map-Model Fitting and Refinement Id 1 Refinement Space Refinement Protocol Refinement Target Overall B Value Fitting Procedure Details
Data Acquisition Detector Type FEI FALCON IV (4k x 4k) Electron Dose (electrons/Å**2) 46
Imaging Experiment 1 Date of Experiment Temperature (Kelvin) Microscope Model TFS KRIOS Minimum Defocus (nm) 900 Maximum Defocus (nm) 2700 Minimum Tilt Angle (degrees) Maximum Tilt Angle (degrees) Nominal CS Imaging Mode BRIGHT FIELD Specimen Holder Model Nominal Magnification Calibrated Magnification Source FIELD EMISSION GUN Acceleration Voltage (kV) 300 Imaging Details
EM Software Task Software Package Version PARTICLE SELECTION crYOLO 1.8.0 MODEL REFINEMENT PHENIX 1.20.1_4487 RECONSTRUCTION cryoSPARC 4.6.2
Image Processing CTF Correction Type CTF Correction Details Number of Particles Selected Particle Selection Details PHASE FLIPPING AND AMPLITUDE CORRECTION