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X-ray structure of Bace-1 in complex with compound 3.b.10
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 5.4 298 pH 5.4, VAPOR DIFFUSION, HANGING DROP, temperature 298K
Crystal Properties Matthews coefficient Solvent content 2.11 41.69
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 73.308 α = 90 b = 105.213 β = 94.98 c = 50.999 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 93 CCD BRUKER SMART 6000 2005-01-01 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU FR-E+ SUPERBRIGHT 1.5418
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2 99 96.5 0.109 11.5 3 25296 24417
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2 59.76 24826 24037 1256 96.82 0.2204 0.21853 0.25551 RANDOM 24.514
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -1.01 -0.26 0.14 0.83
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.93 r_dihedral_angle_4_deg 17.267 r_dihedral_angle_3_deg 14.588 r_dihedral_angle_1_deg 5.876 r_scangle_it 1.374 r_angle_refined_deg 1.097 r_scbond_it 0.838 r_mcangle_it 0.832 r_mcbond_it 0.479 r_nbtor_refined 0.307
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.93 r_dihedral_angle_4_deg 17.267 r_dihedral_angle_3_deg 14.588 r_dihedral_angle_1_deg 5.876 r_scangle_it 1.374 r_angle_refined_deg 1.097 r_scbond_it 0.838 r_mcangle_it 0.832 r_mcbond_it 0.479 r_nbtor_refined 0.307 r_symmetry_vdw_refined 0.199 r_symmetry_hbond_refined 0.187 r_nbd_refined 0.182 r_xyhbond_nbd_refined 0.105 r_chiral_restr 0.075 r_bond_refined_d 0.007 r_gen_planes_refined 0.003
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2911 Nucleic Acid Atoms Solvent Atoms 209 Heterogen Atoms 35
Software Software Software Name Purpose REFMAC refinement PROTEUM PLUS data collection HKL-2000 data reduction HKL-2000 data scaling AMoRE phasing