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Crystallization of a 45 kDa peroxygenase- peroxidase from the mushroom Agrocybe aegerita and structure determination by SAD utilizing only the haem iron
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 4.6 2.0M AMMONIUM SULFATE, 200MM SODIUM ACETATE, PH 4.6
Crystal Properties Matthews coefficient Solvent content 2.29 46
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 112.75 α = 90 b = 144.88 β = 90 c = 134.46 γ = 90
Symmetry Space Group P 21 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC CCD 2007-12-15 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID23-1 ESRF ID23-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.31 48.9 99.4 0.06 15.4 4.8 97006 -3
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.31 2.37 95.7 0.22 5.5 4.8
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2.31 48.91 92154 4851 100 0.18006 0.1774 0.1771 0.23039 0.229 RANDOM 29.918
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.93 2.22 -1.29
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.138 r_dihedral_angle_4_deg 19.436 r_dihedral_angle_3_deg 16.553 r_dihedral_angle_1_deg 7.721 r_scangle_it 3.434 r_mcangle_it 2.983 r_scbond_it 2.366 r_mcbond_it 2.056 r_angle_refined_deg 1.206 r_chiral_restr 0.091
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.138 r_dihedral_angle_4_deg 19.436 r_dihedral_angle_3_deg 16.553 r_dihedral_angle_1_deg 7.721 r_scangle_it 3.434 r_mcangle_it 2.983 r_scbond_it 2.366 r_mcbond_it 2.056 r_angle_refined_deg 1.206 r_chiral_restr 0.091 r_gen_planes_refined 0.015 r_bond_refined_d 0.01 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 10035 Nucleic Acid Atoms Solvent Atoms 1185 Heterogen Atoms 1029
Software Software Software Name Purpose REFMAC refinement XDS data reduction XDS data scaling PHASER phasing