Experiment: 2YJF

Oligomeric assembly of actin bound to MRTF-A

X-RAY DIFFRACTION

Starting Model(s)

Initial Refinement Model(s)
Type	Source	Accession Code	Details
experimental model	PDB	2V52	PDB ENTRY 2V52

Crystallization

Crystalization Experiments
ID	Method	pH	Temperature	Details
1		5.3		pH 5.3

Crystal Properties
Matthews coefficient	Solvent content
4.02	69.45

Crystal Data

Unit Cell
Length ( Å )	Angle ( ˚ )
a = 182.91	α = 90
b = 182.91	β = 90
c = 378.281	γ = 120

Symmetry
Space Group	P 65 2 2

Diffraction

Diffraction Experiment
ID #	Crystal ID	Scattering Type	Data Collection Temperature	Detector	Detector Type	Details	Collection Date	Monochromator	Protocol
1	1	x-ray	100	CCD	ADSC CCD		2009-02-08	M	SINGLE WAVELENGTH

Radiation Source
ID #	Source	Type	Wavelength List	Synchrotron Site	Beamline
1	SYNCHROTRON	DIAMOND BEAMLINE I03		Diamond	I03

Data Collection

Overall
ID #	Resolution (High)	Resolution (Low)	Percent Possible (Observed)	R Merge I (Observed)	Net I Over Average Sigma (I)	Redundancy	Number Reflections (All)	Number Reflections (Observed)	Observed Criterion Sigma (F)	Observed Criterion Sigma (I)	B (Isotropic) From Wilson Plot
1	3.5	45	99.6	0.09	7.1	5.3		47726		2

Highest Resolution Shell
ID #	Resolution (High)	Resolution (Low)	Percent Possible (All)	Percent Possible (Observed)	R Merge I (Observed)	Mean I Over Sigma (Observed)	Redundancy	Number Unique Reflections (All)
1	3.5	3.69	99.6		0.39	2	5.1

Refinement

Statistics
Diffraction ID	Structure Solution Method	Starting model	Resolution (High)	Resolution (Low)	Number Reflections (Observed)	Number Reflections (R-Free)	Percent Reflections (Observed)	R-Factor (Observed)	R-Work (Depositor)	R-Work (DCC)	R-Free (Depositor)	R-Free (DCC)	Mean Isotropic B
X-RAY DIFFRACTION	MOLECULAR REPLACEMENT	PDB ENTRY 2V52	3.5	46.525	46151	2342	96.34	0.2396	0.2379	0.2313	0.2722	0.2571

Temperature Factor Modeling
Anisotropic B[1][1]	Anisotropic B[1][2]	Anisotropic B[1][3]	Anisotropic B[2][2]	Anisotropic B[2][3]	Anisotropic B[3][3]
10.1626			10.1626		-20.3252

RMS Deviations
Key	Refinement Restraint Deviation
f_dihedral_angle_d	20.406
f_angle_d	1.023
f_chiral_restr	0.064
f_bond_d	0.011
f_plane_restr	0.004

Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms	Number
Protein Atoms	13058
Nucleic Acid Atoms
Solvent Atoms
Heterogen Atoms	214

Software

Software
Software Name	Purpose
PHENIX	refinement
PHENIX	phasing