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Crystal Structure of Rv0371C complex with Manganese from Mycobacterium Tuberculosis H37Rv
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2WEE PDB ENTRY 2WEE
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 18% (V/V) PEG 4000, 0.1 M MES (PH 6.0) BY MICROSEEDING
Crystal Properties Matthews coefficient Solvent content 2.18 43.57
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 42.22 α = 90 b = 59.697 β = 90 c = 146.379 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD BRUKER PROTEUM 300 2008-06-16 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON PAL/PLS BEAMLINE 4A PAL/PLS 4A
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.9 50 99.9 0.07 31.27 7.1 30184 2
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.9 1.97 100 0.45 3.76 7.2
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 2WEE 1.9 50.01 28485 1521 99.4 0.20507 0.20346 0.2105 0.23533 0.2459 RANDOM 33.651
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.18 1.1 -0.92
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.228 r_dihedral_angle_4_deg 18.048 r_dihedral_angle_3_deg 11.11 r_dihedral_angle_1_deg 8.858 r_scangle_it 3.258 r_scbond_it 2.03 r_mcangle_it 1.272 r_angle_refined_deg 0.845 r_mcbond_it 0.676 r_chiral_restr 0.053
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.228 r_dihedral_angle_4_deg 18.048 r_dihedral_angle_3_deg 11.11 r_dihedral_angle_1_deg 8.858 r_scangle_it 3.258 r_scbond_it 2.03 r_mcangle_it 1.272 r_angle_refined_deg 0.845 r_mcbond_it 0.676 r_chiral_restr 0.053 r_bond_refined_d 0.006 r_gen_planes_refined 0.004 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2744 Nucleic Acid Atoms Solvent Atoms 204 Heterogen Atoms 20
Software Software Software Name Purpose REFMAC refinement MOLREP phasing