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HUMAN ABL2 IN COMPLEX WITH AURORA KINASE INHIBITOR VX-680
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 3HMI PDB ENTRY 3HMI
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 7 277 0.8M SODIUM SUCCINATE, PH 7, VAPOUR DIFFUSION, SITTING DROP, TEMPERATURE 277K
Crystal Properties Matthews coefficient Solvent content 4.2 70.69
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 170.5 α = 90 b = 170.5 β = 90 c = 100.651 γ = 120
Symmetry Space Group P 32 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC CCD 2009-04-16 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON DIAMOND BEAMLINE I03 Diamond I03
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.81 41.14 99.9 0.1 10.8 7.3 41549
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.81 2.96 100 1.02 1.9 7.5
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 3HMI 2.81 147.66 39462 2086 99.9 0.24782 0.24587 0.2399 0.28425 0.2693 RANDOM 94.264
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.93 0.96 1.93 -2.89
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.716 r_dihedral_angle_3_deg 15.891 r_dihedral_angle_4_deg 14.323 r_dihedral_angle_1_deg 5.301 r_scangle_it 1.954 r_angle_refined_deg 1.345 r_scbond_it 1.163 r_angle_other_deg 0.966 r_mcangle_it 0.727 r_mcbond_it 0.39
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.716 r_dihedral_angle_3_deg 15.891 r_dihedral_angle_4_deg 14.323 r_dihedral_angle_1_deg 5.301 r_scangle_it 1.954 r_angle_refined_deg 1.345 r_scbond_it 1.163 r_angle_other_deg 0.966 r_mcangle_it 0.727 r_mcbond_it 0.39 r_mcbond_other 0.105 r_chiral_restr 0.07 r_bond_refined_d 0.011 r_gen_planes_refined 0.005 r_bond_other_d 0.002 r_gen_planes_other 0.002 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 5838 Nucleic Acid Atoms Solvent Atoms 13 Heterogen Atoms 234
Software Software Software Name Purpose REFMAC refinement MOSFLM data reduction SCALA data scaling PHASER phasing