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Cu metallated H254F mutant of nitrite reductase
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1OE1 PDB ENTRY 1OE1
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 6.5 PEG 550 MME, ZNSO4, MES PH 6.5
Crystal Properties Matthews coefficient Solvent content 3.02 56.26
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 89.333 α = 90 b = 89.333 β = 90 c = 287.851 γ = 120
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 225 mm CCD MIRRORS 2007-09-28 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SRS BEAMLINE PX10.1 SRS PX10.1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.5 26 97.1 0.05 18.9 3.2 133132 -10
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.5 1.55 78.2 0.27 2.95 3
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 1OE1 1.5 95.78 126006 6671 96.71 0.14623 0.14462 0.1527 0.1765 0.1817 RANDOM 19.277
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.33 0.17 0.33 -0.5
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.081 r_dihedral_angle_4_deg 18.424 r_dihedral_angle_3_deg 11.761 r_dihedral_angle_1_deg 7.634 r_scangle_it 5.906 r_scbond_it 4.268 r_mcangle_it 2.738 r_angle_refined_deg 2.003 r_mcbond_it 1.931 r_rigid_bond_restr 1.839
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.081 r_dihedral_angle_4_deg 18.424 r_dihedral_angle_3_deg 11.761 r_dihedral_angle_1_deg 7.634 r_scangle_it 5.906 r_scbond_it 4.268 r_mcangle_it 2.738 r_angle_refined_deg 2.003 r_mcbond_it 1.931 r_rigid_bond_restr 1.839 r_angle_other_deg 0.993 r_mcbond_other 0.752 r_chiral_restr 0.278 r_bond_refined_d 0.019 r_gen_planes_refined 0.01 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 5122 Nucleic Acid Atoms Solvent Atoms 613 Heterogen Atoms 131
Software Software Software Name Purpose REFMAC refinement HKL-2000 data reduction HKL-2000 data scaling PHASER phasing