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CRYSTAL STRUCTURE OF JMJD3
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 8.5 MORPHEUS SCREEN (MOLECULAR DIMENSIONS) CONDITION A12 (0.03M MGCL2, 0.03M CACL2, 0.1M TRIS HCL/BICINE PH 8.5, 12.5%V/V MPD, 12.5%W/V PEG1000, 12.5%W/V PEG3350)
Crystal Properties Matthews coefficient Solvent content 2.53 51.04
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 61.215 α = 86.09 b = 65.154 β = 67.19 c = 77.462 γ = 68.26
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC CCD 2010-04-28 M SINGLE WAVELENGTH 2 1 x-ray CCD ADSC CCD M
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID14-4 ESRF ID14-4 2 SYNCHROTRON ESRF BEAMLINE ID14-4 ESRF ID14-4
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2 40 89.9 0.06 12.3 2.3 61840 2
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2 2.03 56.1 0.51 1.5 2.1
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT NONE 2 71.13 59387 2450 89.76 0.18081 0.17932 0.1885 0.21574 0.2267 RANDOM 44.196
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.95 -2.46 -1.11 1.4 1.85 0.08
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.901 r_dihedral_angle_4_deg 13.019 r_dihedral_angle_3_deg 12.713 r_dihedral_angle_1_deg 7.485 r_scangle_it 3.072 r_scbond_it 2.025 r_mcangle_it 1.722 r_angle_refined_deg 1.089 r_mcbond_it 0.876 r_angle_other_deg 0.806
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.901 r_dihedral_angle_4_deg 13.019 r_dihedral_angle_3_deg 12.713 r_dihedral_angle_1_deg 7.485 r_scangle_it 3.072 r_scbond_it 2.025 r_mcangle_it 1.722 r_angle_refined_deg 1.089 r_mcbond_it 0.876 r_angle_other_deg 0.806 r_mcbond_other 0.098 r_chiral_restr 0.063 r_bond_refined_d 0.01 r_gen_planes_refined 0.006 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 6805 Nucleic Acid Atoms Solvent Atoms 560 Heterogen Atoms 34
Software Software Software Name Purpose DENZO data reduction SCALEPACK data scaling autoSHARP phasing RESOLVE phasing REFMAC refinement