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Structure of the gh92 family glycosyl hydrolase ccman5
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 7.5 0.2 M NAF, 0.1 M BIS-TRIS PROPANE PH 7.5, 20% PEG 3350
Crystal Properties Matthews coefficient Solvent content 2.58 52.4
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 82.202 α = 90 b = 91.158 β = 90 c = 224.523 γ = 90
Symmetry Space Group P 2 2 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARRESEARCH 2010-08-18 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SLS BEAMLINE X06DA SLS X06DA
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2 47.8 97.6 0.16 7.8 5.7 106820 11.2
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2 2.1 89.6 0.4 3.7 4.6
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT NONE 2 47.8 106820 5629 97.53 0.19303 0.19067 0.1921 0.23861 0.2395 RANDOM 8.106
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.06 -0.1 0.04
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.576 r_dihedral_angle_4_deg 15.512 r_dihedral_angle_3_deg 13.541 r_dihedral_angle_1_deg 5.949 r_scangle_it 2.539 r_scbond_it 1.605 r_angle_refined_deg 1.237 r_mcangle_it 0.872 r_mcbond_it 0.485 r_chiral_restr 0.084
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.576 r_dihedral_angle_4_deg 15.512 r_dihedral_angle_3_deg 13.541 r_dihedral_angle_1_deg 5.949 r_scangle_it 2.539 r_scbond_it 1.605 r_angle_refined_deg 1.237 r_mcangle_it 0.872 r_mcbond_it 0.485 r_chiral_restr 0.084 r_bond_refined_d 0.011 r_gen_planes_refined 0.006 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 11513 Nucleic Acid Atoms Solvent Atoms 868 Heterogen Atoms 19
Software Software Software Name Purpose REFMAC refinement XDS data reduction SCALA data scaling PHASER phasing