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C-terminal domain of BC2L-C Lectin from Burkholderia cenocepacia
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2BV4 PDB ENTRY 2BV4
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 5.5 100 MM SODIUM CITRATE PH 5.5, 2.5 M AMMONIUM SULPHATE.
Crystal Properties Matthews coefficient Solvent content 2.8 57
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 100.814 α = 90 b = 100.814 β = 90 c = 47.313 γ = 120
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 210 MIRRORS M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID14-1 ESRF ID14-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 0.93 40 97.5 0.05 11.3 6.4 21834 2 27.2
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.9 2 86 0.02 2.8 2.4
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 2BV4 1.9 87.37 20177 1094 97.42 0.15781 0.15562 0.1618 0.19938 0.2067 RANDOM 14.501
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.39 -0.2 -0.39 0.59
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.183 r_dihedral_angle_4_deg 14.847 r_dihedral_angle_3_deg 12.434 r_dihedral_angle_1_deg 6.882 r_scangle_it 4.133 r_scbond_it 2.517 r_mcangle_it 1.792 r_angle_refined_deg 1.475 r_mcbond_it 0.986 r_angle_other_deg 0.847
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.183 r_dihedral_angle_4_deg 14.847 r_dihedral_angle_3_deg 12.434 r_dihedral_angle_1_deg 6.882 r_scangle_it 4.133 r_scbond_it 2.517 r_mcangle_it 1.792 r_angle_refined_deg 1.475 r_mcbond_it 0.986 r_angle_other_deg 0.847 r_mcbond_other 0.234 r_chiral_restr 0.089 r_bond_refined_d 0.014 r_gen_planes_refined 0.006 r_bond_other_d 0.002 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1754 Nucleic Acid Atoms Solvent Atoms 286 Heterogen Atoms 10
Software Software Software Name Purpose REFMAC refinement MOSFLM data reduction SCALA data scaling MOLREP phasing