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Human galectin-3 in complex with a benzamido-N-acetyllactoseamine inhibitor
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details other GALECTIN-3C IN COMPLEX WITH COMPOUND 354
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 7.5 pH 7.5
Crystal Properties Matthews coefficient Solvent content 1.73 29
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 35.8 α = 90 b = 57.69 β = 90 c = 62.41 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 105 CCD MARRESEARCH SX-165 MULTILAYER MIRROR 2009-03-20 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON MAX II BEAMLINE I911-2 MAX II I911-2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.2 25 99.6 0.08 11.5 6.7 41094 -10
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.2 1.23 96.9 0.66 2.2 4.9
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT FREE R-VALUE GALECTIN-3C IN COMPLEX WITH COMPOUND 354 1.2 25 39025 2050 94.8 0.1414 0.1385 0.1473 0.1934 RANDOM
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
Coordinate Error Structure Solution Method Refinement High Resolution Refinement Low Resolution 45 1149 1364
RMS Deviations Key Refinement Restraint Deviation s_approx_iso_adps 0.097 s_zero_chiral_vol 0.08 s_non_zero_chiral_vol 0.07 s_similar_adp_cmpnt 0.05 s_from_restr_planes 0.0365 s_angle_d 0.031 s_anti_bump_dis_restr 0.022 s_bond_d 0.011 s_rigid_bond_adp_cmpnt 0.004 s_similar_dist
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1106 Nucleic Acid Atoms Solvent Atoms 231 Heterogen Atoms 35
Software Software Software Name Purpose SHELXL-97 refinement XDS data reduction XSCALE data scaling SHELXL phasing