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Crystal structure of Plasmodium berghei actin depolymerization factor 2
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1F7S PDB ENTRIES 1F7S, 1AHQ, AND 2I2Q experimental model PDB 1AHQ PDB ENTRIES 1F7S, 1AHQ, AND 2I2Q experimental model PDB 2I2Q PDB ENTRIES 1F7S, 1AHQ, AND 2I2Q
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 5.2 277 26 % PEG 10000, 0.1 M SODIUM ACETATE PH 5.2, 277 K
Crystal Properties Matthews coefficient Solvent content 2.19 44
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 111.58 α = 90 b = 57.9 β = 90 c = 40.49 γ = 90
Symmetry Space Group P 21 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARRESEARCH TOROID MIRROR FOR HORIZONTAL AND VERTICAL FOCUSING 2009-03-20 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON MAX II BEAMLINE I911-3 MAX II I911-3
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.1 20 99.1 0.06 16.4 6.1 15859 -3 28.385
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.1 2.15 99.8 0.65 4.2 6.4
Refinement Statistics Diffraction ID Structure Solution Method Starting model Resolution (High) Resolution (Low) Cut-off Sigma (F) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT PDB ENTRIES 1F7S, 1AHQ, AND 2I2Q 2.1 19.92 2.01 15033 792 99.28 0.1895 0.1865 0.1849 0.2455 0.2445
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.9563 -7.2861 5.3298
RMS Deviations Key Refinement Restraint Deviation f_dihedral_angle_d 19.78 f_angle_d 1.098 f_chiral_restr 0.073 f_bond_d 0.008 f_plane_restr 0.005
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2344 Nucleic Acid Atoms Solvent Atoms 25 Heterogen Atoms
Software Software Software Name Purpose PHENIX refinement XDS data reduction XSCALE data scaling PHASER phasing