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Crystal structure of Plasmodium falciparum actin depolymerization factor 1
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1F7S PDB ENTRIES 1F7S, 1AHQ AND 2I2Q experimental model PDB 1AHQ PDB ENTRIES 1F7S, 1AHQ AND 2I2Q experimental model PDB 2I2Q PDB ENTRIES 1F7S, 1AHQ AND 2I2Q
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 7.8 277 2.5 M AMMONUIM SULFATE, 0.1 M HEPES PH 7.8, 277 K
Crystal Properties Matthews coefficient Solvent content 3.71 67
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 68.84 α = 90 b = 68.84 β = 90 c = 76.03 γ = 120
Symmetry Space Group P 32 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARRESEARCH MULTILAYER MIRROR 2010-02-11 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON MAX II BEAMLINE I911-2 MAX II I911-2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2 20 96.5 0.05 38.5 10.4 14010 -3 24.85
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2 2.05 94.5 0.28 14.5 7
Refinement Statistics Diffraction ID Structure Solution Method Starting model Resolution (High) Resolution (Low) Cut-off Sigma (F) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT PDB ENTRIES 1F7S, 1AHQ AND 2I2Q 1.96 27.752 1.99 14010 702 90.92 0.1894 0.1872 0.183 0.2296 0.2345
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.9512 0.9512 -1.9024
RMS Deviations Key Refinement Restraint Deviation f_dihedral_angle_d 18.597 f_angle_d 1.003 f_chiral_restr 0.081 f_bond_d 0.007 f_plane_restr 0.003
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 966 Nucleic Acid Atoms Solvent Atoms 187 Heterogen Atoms 20
Software Software Software Name Purpose PHENIX refinement XDS data reduction XSCALE data scaling PHASER phasing