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Tranylcypromine-inhibited human monoamine oxidase B in complex with 2- (2-benzofuranyl)-2-imidazoline
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1OJB PDB ENTRY 1OJB
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 6.5 PEG 4000 12%, LISO4 70MM, ADA 0.1M PH 6.5
Crystal Properties Matthews coefficient Solvent content 2.56 51.63
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 131.893 α = 90 b = 223.706 β = 90 c = 86.716 γ = 90
Symmetry Space Group C 2 2 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID14-4 1 ESRF ID14-4
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.9 50 100 0.1 6.2 100933 1
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 1OJB 1.9 46.98 98378 2553 99.98 0.15601 0.15514 0.1559 0.18941 0.1893 RANDOM 13.566
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.4 -0.38 -0.02
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.174 r_dihedral_angle_4_deg 16.363 r_dihedral_angle_3_deg 13.288 r_dihedral_angle_1_deg 5.941 r_scangle_it 4.195 r_scbond_it 2.563 r_angle_refined_deg 1.495 r_mcangle_it 1.477 r_mcbond_it 0.83 r_chiral_restr 0.116
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.174 r_dihedral_angle_4_deg 16.363 r_dihedral_angle_3_deg 13.288 r_dihedral_angle_1_deg 5.941 r_scangle_it 4.195 r_scbond_it 2.563 r_angle_refined_deg 1.495 r_mcangle_it 1.477 r_mcbond_it 0.83 r_chiral_restr 0.116 r_bond_refined_d 0.02 r_gen_planes_refined 0.008 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 7914 Nucleic Acid Atoms Solvent Atoms 754 Heterogen Atoms 198
Software Software Software Name Purpose REFMAC refinement MOSFLM data reduction SCALA data scaling