☰ Navigation Tabs
80 microsecond laue diffraction snapshot from crystals of a photosynthetic reaction centre 3 millisecond following photoactivation.
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2WJN PDB ENTRY 2WJN
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 8.1 MONOOLEIN WAS MIXED WITH 0.1M HEPES PH 8.1, 0.1% LDAO IN 60:40 (W/W) RATIO. THEN THE CUBIC PHASE WAS MIXED WITH 16% JEFFAMINE M600, 1M HEPES PH 8.1, 0.7M AMMONIUM SULFATE, 2.5% 1,2,3-HEPTANETRIOL IN 1 TO 4 RATIO AND EQUILIBRATED UNTIL PHASE SEPARATION OCCURED. THE UPPER LIPIDIC-SPONGE PHASE WAS HARVESTED AND 1UL WAS USED AS A PRECIPITANT SOLUTION TOGETHER WITH 1UL OF 25 MG/ML PROTEIN SOLUTION IN A HANGING-DROP, VAPOUR-DIFFUSION EXPERIMENT.
Crystal Properties Matthews coefficient Solvent content 3.96 68.69
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 85.693 α = 90 b = 143.47 β = 90 c = 177.998 γ = 90
Symmetry Space Group P 21 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 293 CCD MARRESEARCH 2007-09-12 L LAUE
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID09 0.8-1.1 ESRF ID09
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 3 46.2 90.6 0.18 10.4 7.7 40530 2 43.16
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 3 3.14 74.2 6.9 7.7
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 2WJN 3 46.18 38478 2049 90.6 0.27866 0.27653 0.2769 0.3194 0.3143 RANDOM 27.619
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.03 0.09 -0.12
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 30.537 r_dihedral_angle_3_deg 13.912 r_dihedral_angle_4_deg 12.987 r_dihedral_angle_1_deg 5.592 r_angle_refined_deg 1.786 r_scangle_it 0.935 r_angle_other_deg 0.859 r_scbond_it 0.561 r_mcangle_it 0.467 r_mcbond_it 0.251
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 30.537 r_dihedral_angle_3_deg 13.912 r_dihedral_angle_4_deg 12.987 r_dihedral_angle_1_deg 5.592 r_angle_refined_deg 1.786 r_scangle_it 0.935 r_angle_other_deg 0.859 r_scbond_it 0.561 r_mcangle_it 0.467 r_mcbond_it 0.251 r_chiral_restr 0.056 r_mcbond_other 0.029 r_bond_refined_d 0.014 r_gen_planes_refined 0.005 r_gen_planes_other 0.002 r_bond_other_d 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 9234 Nucleic Acid Atoms Solvent Atoms 2 Heterogen Atoms 610
Software Software Software Name Purpose REFMAC refinement Precognition data reduction Epinorm data scaling PHASER phasing