2X5H

Crystal structure of the ORF131 L26M L51M double mutant from Sulfolobus islandicus rudivirus 1


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
12.1 M SODIUM MALONATE AND CRYOPROTECTED WITH 2.4 M MALONATE.
Crystal Properties
Matthews coefficientSolvent content
2.243

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 37.94α = 90.22
b = 46.971β = 95.05
c = 48.976γ = 91.78
Symmetry
Space GroupP 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDADSC CCDMIRRORS2004-07-26MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONESRF BEAMLINE ID14-4ESRFID14-4

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.814970.0424.83.428543
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
11.81.9950.196.53.4

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUTPDB ENTRY 2X5G1.81428543152196.680.202820.199960.25715RANDOM27.173
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-0.19-0.33-0.080.20.19-0.04
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg37.429
r_dihedral_angle_3_deg14.229
r_dihedral_angle_4_deg11.823
r_dihedral_angle_1_deg5.658
r_scangle_it2.451
r_scbond_it1.787
r_angle_refined_deg1.149
r_mcangle_it0.995
r_mcbond_it0.902
r_angle_other_deg0.772
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg37.429
r_dihedral_angle_3_deg14.229
r_dihedral_angle_4_deg11.823
r_dihedral_angle_1_deg5.658
r_scangle_it2.451
r_scbond_it1.787
r_angle_refined_deg1.149
r_mcangle_it0.995
r_mcbond_it0.902
r_angle_other_deg0.772
r_symmetry_vdw_other0.225
r_nbd_refined0.2
r_nbd_other0.179
r_nbtor_refined0.171
r_mcbond_other0.16
r_symmetry_hbond_refined0.159
r_symmetry_vdw_refined0.154
r_xyhbond_nbd_refined0.152
r_nbtor_other0.082
r_chiral_restr0.065
r_bond_refined_d0.009
r_gen_planes_refined0.003
r_bond_other_d0.001
r_gen_planes_other0.001
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_mcangle_other
r_scbond_other
r_scangle_other
r_long_range_B_refined
r_long_range_B_other
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms2998
Nucleic Acid Atoms
Solvent Atoms380
Heterogen Atoms5

Software

Software
Software NamePurpose
REFMACrefinement
XDSdata reduction
XSCALEdata scaling
MOLREPphasing