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Yersinia Pestis Plasminogen Activator Pla (Native)
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model Other PLA NATIVE OSMIUM DERIVATIVE
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 4.8 27% PEG 400, 0.1 M LISO4, 0.1 M LI CITRATE, PH 4.8
Crystal Properties Matthews coefficient Solvent content 5.34 77
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 140.241 α = 90 b = 140.241 β = 90 c = 130.502 γ = 120
Symmetry Space Group P 65 2 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC CCD M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON NSLS BEAMLINE X6A NSLS X6A
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.3 50 99.4 0.1 31 14.2 31644 35.36
Refinement Statistics Diffraction ID Structure Solution Method Starting model Resolution (High) Resolution (Low) Cut-off Sigma (F) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT PLA NATIVE OSMIUM DERIVATIVE 2.3 19.97 0.12 31644 1854 92.4 0.201 0.199 0.192 0.226 0.2158
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 3.0133 3.0133 -6.0265
RMS Deviations Key Refinement Restraint Deviation f_dihedral_angle_d 21.772 f_angle_d 1.217 f_chiral_restr 0.091 f_bond_d 0.007 f_plane_restr 0.004
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2173 Nucleic Acid Atoms Solvent Atoms 135 Heterogen Atoms 194
Software Software Software Name Purpose PHENIX refinement HKL-2000 data reduction SCALEPACK data scaling PHASER phasing