☰ Navigation Tabs
Structure of beta-glucosidase 3B from Thermotoga neapolitana in complex with glycerol
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 7.4 PROTEIN 3-5 MG/ML, 16% PEG 3350, 0.1 M KBR, 90 MM BIS-TRIS PROPANE PH 7.4
Crystal Properties Matthews coefficient Solvent content 2.57 57
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 74.946 α = 90 b = 127.246 β = 90 c = 175.209 γ = 90
Symmetry Space Group C 2 2 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC CCD MULTILAYER MIRRORS 2006-09-21 M MAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID29 ESRF ID29
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.3 34.5 98.8 0.08 13.2 4.5 37161 43.22
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.3 2.4 93.4 0.52 2.3
Refinement Statistics Diffraction ID Structure Solution Method Starting model Resolution (High) Resolution (Low) Cut-off Sigma (F) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MAD NONE 2.313 34.453 1.37 36846 1858 99.66 0.1766 0.1737 0.1727 0.2326 0.2329 55.5
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -5.5703 12.3859 -6.8156
RMS Deviations Key Refinement Restraint Deviation f_dihedral_angle_d 16.24 f_angle_d 0.862 f_chiral_restr 0.062 f_bond_d 0.005 f_plane_restr 0.003
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 5660 Nucleic Acid Atoms Solvent Atoms 231 Heterogen Atoms 10
Software Software Software Name Purpose PHENIX refinement XDS data reduction XSCALE data scaling CCP4 phasing SHELXD phasing SHARP phasing