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Structure of bacterial globin from Campylobacter jejuni at 1.35 A resolution
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1VHB PDB ENTRY 1VHB
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 8 1.8M A.S.,0.1M TRIS/HCL, PH8.0
Crystal Properties Matthews coefficient Solvent content 1.99 38.22
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 39.55 α = 90 b = 37.98 β = 102.68 c = 43.76 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC CCD M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SRS BEAMLINE PX14.2 SRS PX14.2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.35 19.3 95 0.05 11.7 2 24978 1
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.35 1.37 89 0.45 2.1 1.8
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 1VHB 1.35 20 24978 1567 94.79 0.17997 0.17808 0.185 0.20887 0.2217 RANDOM 15.441
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -1.17 0.37 -0.81 2.14
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_3_deg 13.892 r_sphericity_free 10.82 r_sphericity_bonded 6 r_scangle_it 4.109 r_dihedral_angle_1_deg 3.479 r_scbond_it 2.921 r_mcangle_it 2.122 r_mcbond_it 1.487 r_angle_refined_deg 1.453 r_rigid_bond_restr 1.301
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_3_deg 13.892 r_sphericity_free 10.82 r_sphericity_bonded 6 r_scangle_it 4.109 r_dihedral_angle_1_deg 3.479 r_scbond_it 2.921 r_mcangle_it 2.122 r_mcbond_it 1.487 r_angle_refined_deg 1.453 r_rigid_bond_restr 1.301 r_angle_other_deg 0.823 r_symmetry_vdw_refined 0.347 r_nbd_refined 0.254 r_symmetry_vdw_other 0.254 r_symmetry_hbond_refined 0.206 r_nbd_other 0.189 r_xyhbond_nbd_refined 0.15 r_chiral_restr 0.094 r_bond_refined_d 0.014 r_gen_planes_refined 0.007 r_gen_planes_other 0.002 r_bond_other_d 0.001 r_dihedral_angle_2_deg r_dihedral_angle_4_deg r_nbtor_refined r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1118 Nucleic Acid Atoms Solvent Atoms 147 Heterogen Atoms 45
Software Software Software Name Purpose REFMAC refinement DENZO data reduction SCALEPACK data scaling MOLREP phasing