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Crystal Structure of the Human CLK3 in complex with DKI
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 0.2M (NH4)2SO4, 0.1M BIS-TRIS PH 5.5, 25% PEG 3350
Crystal Properties Matthews coefficient Solvent content 2.53 51.4
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 89.15 α = 90 b = 62.33 β = 96.04 c = 74.15 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M 2009-04-06 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SLS BEAMLINE X06SA SLS X06SA
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.92 44.32 97.1 0.05 7.3 4.3 31032 2
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.92 2.02 96.2 0.76 2 4.4
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.92 73.74 28646 1512 97.19 0.17215 0.17 0.1749 0.21137 0.2199 RANDOM 15.837
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.08 -0.62 -0.06 -0.16
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.111 r_dihedral_angle_4_deg 17.13 r_dihedral_angle_3_deg 12.938 r_dihedral_angle_1_deg 5.496 r_scangle_it 4.249 r_scbond_it 2.7 r_mcangle_it 1.57 r_angle_refined_deg 1.449 r_mcbond_it 0.864 r_chiral_restr 0.11
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.111 r_dihedral_angle_4_deg 17.13 r_dihedral_angle_3_deg 12.938 r_dihedral_angle_1_deg 5.496 r_scangle_it 4.249 r_scbond_it 2.7 r_mcangle_it 1.57 r_angle_refined_deg 1.449 r_mcbond_it 0.864 r_chiral_restr 0.11 r_bond_refined_d 0.015 r_gen_planes_refined 0.007 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2859 Nucleic Acid Atoms Solvent Atoms 307 Heterogen Atoms 74
Software Software Software Name Purpose REFMAC refinement iMOSFLM data reduction SCALA data scaling PHASER phasing