2WQ2

GCN4 leucine zipper mutant with three IxxNTxx motifs coordinating iodide


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
12.4 M (NH4)2HPO4, 100 MM TRIS PH 8.5
Crystal Properties
Matthews coefficientSolvent content
239

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 56.34α = 90
b = 56.34β = 90
c = 56.34γ = 90
Symmetry
Space GroupI 21 3

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDMARRESEARCHMSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONSLS BEAMLINE X10SASLSX10SA

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.351899.40.0316.32.83660523.3
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
11.351.4499.70.52.082.76

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONSADTHROUGHOUTNONE1.3617.85625433199.670.143590.141540.18378RANDOM16.774
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg31.842
r_dihedral_angle_3_deg13.091
r_scangle_it7.692
r_scbond_it5.215
r_mcangle_it4.541
r_dihedral_angle_1_deg4.426
r_mcbond_it3.155
r_dihedral_angle_4_deg2.869
r_sphericity_free2.768
r_sphericity_bonded2.552
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg31.842
r_dihedral_angle_3_deg13.091
r_scangle_it7.692
r_scbond_it5.215
r_mcangle_it4.541
r_dihedral_angle_1_deg4.426
r_mcbond_it3.155
r_dihedral_angle_4_deg2.869
r_sphericity_free2.768
r_sphericity_bonded2.552
r_rigid_bond_restr2.067
r_mcbond_other1.751
r_angle_refined_deg0.876
r_angle_other_deg0.859
r_chiral_restr0.045
r_bond_refined_d0.008
r_gen_planes_refined0.003
r_bond_other_d0.002
r_gen_planes_other
r_nbd_refined
r_nbd_other
r_nbtor_refined
r_nbtor_other
r_xyhbond_nbd_refined
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_vdw_refined
r_symmetry_vdw_other
r_symmetry_hbond_refined
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_mcangle_other
r_scbond_other
r_scangle_other
r_long_range_B_refined
r_long_range_B_other
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms241
Nucleic Acid Atoms
Solvent Atoms58
Heterogen Atoms3

Software

Software
Software NamePurpose
REFMACrefinement
XDSdata reduction
XSCALEdata scaling
SHELXphasing