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Clavulanic acid biosynthesis oligopeptide binding protein 2
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 8 pH 8
Crystal Properties Matthews coefficient Solvent content 2.3 46
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 53.609 α = 90 b = 84.378 β = 91.71 c = 62.411 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 210 2005-12-15 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID14-1 ESRF ID14-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.45 62.4 99.9 0.06 12.3 3.8 97940 14.3
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.45 1.53 99.3 0.45 3.2 3.5
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT NONE 1.45 62.38 93140 4873 99.87 0.18888 0.18823 0.1874 0.20131 0.1914 RANDOM 13.285
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.61 0.13 0.78 -0.17
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 29.426 r_dihedral_angle_4_deg 13.79 r_dihedral_angle_3_deg 11.931 r_dihedral_angle_1_deg 5.294 r_scangle_it 1.787 r_scbond_it 1.118 r_angle_refined_deg 1.038 r_mcangle_it 0.725 r_mcbond_it 0.423 r_nbtor_refined 0.304
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 29.426 r_dihedral_angle_4_deg 13.79 r_dihedral_angle_3_deg 11.931 r_dihedral_angle_1_deg 5.294 r_scangle_it 1.787 r_scbond_it 1.118 r_angle_refined_deg 1.038 r_mcangle_it 0.725 r_mcbond_it 0.423 r_nbtor_refined 0.304 r_nbd_refined 0.182 r_symmetry_vdw_refined 0.135 r_symmetry_hbond_refined 0.103 r_xyhbond_nbd_refined 0.08 r_chiral_restr 0.068 r_bond_refined_d 0.006 r_gen_planes_refined 0.003 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4312 Nucleic Acid Atoms Solvent Atoms 394 Heterogen Atoms 18
Software Software Software Name Purpose REFMAC refinement MOSFLM data reduction SCALA data scaling SHELX phasing