2WO4

3b' carbohydrate-binding module from the Cel9V glycoside hydrolase from Clostridium thermocellum, in-house data


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
151.8 M AMMONIUM SULFATE, 0.1 M CITRIC ACID PH 5.0
Crystal Properties
Matthews coefficientSolvent content
3.4163.9

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 73.897α = 90
b = 73.897β = 90
c = 85.755γ = 90
Symmetry
Space GroupP 41 21 2

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100IMAGE PLATERIGAKU RAXIS-IVOSMIC CONFOCAL MIRRORS2004-05-05MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1ROTATING ANODERIGAKU RUH3R

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.79301000.0632.26.52300622.8
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
11.791.851000.7632.26.5

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUTPDB ENTRY 1NBC1.8555.9819775106399.550.150370.14820.19138RANDOM26.213
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
0.610.61-1.23
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg34.643
r_dihedral_angle_4_deg24.502
r_dihedral_angle_3_deg16.929
r_scangle_it10.478
r_dihedral_angle_1_deg7.645
r_scbond_it6.66
r_mcangle_it5.156
r_mcbond_it3.118
r_angle_refined_deg1.978
r_angle_other_deg1.224
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg34.643
r_dihedral_angle_4_deg24.502
r_dihedral_angle_3_deg16.929
r_scangle_it10.478
r_dihedral_angle_1_deg7.645
r_scbond_it6.66
r_mcangle_it5.156
r_mcbond_it3.118
r_angle_refined_deg1.978
r_angle_other_deg1.224
r_mcbond_other0.904
r_chiral_restr0.13
r_bond_refined_d0.024
r_gen_planes_refined0.01
r_bond_other_d0.003
r_gen_planes_other0.003
r_nbd_refined
r_nbd_other
r_nbtor_refined
r_nbtor_other
r_xyhbond_nbd_refined
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_vdw_refined
r_symmetry_vdw_other
r_symmetry_hbond_refined
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_mcangle_other
r_scbond_other
r_scangle_other
r_long_range_B_refined
r_long_range_B_other
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms1210
Nucleic Acid Atoms
Solvent Atoms210
Heterogen Atoms7

Software

Software
Software NamePurpose
REFMACrefinement
DENZOdata reduction
SCALEPACKdata scaling
MOLREPphasing