X-RAY DIFFRACTION

Crystallization

Crystal Properties
Matthews coefficientSolvent content
2.243.61

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 73.55α = 90
b = 73.55β = 90
c = 124.76γ = 120
Symmetry
Space GroupH 3

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray77.36MARRESEARCH2008-11-29MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONESRF BEAMLINE BM30AESRFBM30A

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.2150720.0528.279.7548072
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
11.211.247.30.582.373

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUTPDB ENTRY 2JHM1.2127.545206427411000.178390.177720.19137RANDOM14.137
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
0.230.120.23-0.35
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg30.203
r_dihedral_angle_4_deg13.708
r_dihedral_angle_3_deg12.153
r_dihedral_angle_1_deg5.962
r_scangle_it1.823
r_scbond_it1.327
r_angle_refined_deg1.108
r_mcangle_it0.97
r_mcbond_it0.596
r_nbtor_refined0.304
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg30.203
r_dihedral_angle_4_deg13.708
r_dihedral_angle_3_deg12.153
r_dihedral_angle_1_deg5.962
r_scangle_it1.823
r_scbond_it1.327
r_angle_refined_deg1.108
r_mcangle_it0.97
r_mcbond_it0.596
r_nbtor_refined0.304
r_nbd_refined0.191
r_symmetry_vdw_refined0.155
r_chiral_restr0.094
r_xyhbond_nbd_refined0.085
r_symmetry_hbond_refined0.079
r_metal_ion_refined0.063
r_bond_refined_d0.007
r_gen_planes_refined0.004
r_bond_other_d
r_angle_other_deg
r_gen_planes_other
r_nbd_other
r_nbtor_other
r_xyhbond_nbd_other
r_metal_ion_other
r_symmetry_vdw_other
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_mcbond_other
r_mcangle_other
r_scbond_other
r_scangle_other
r_long_range_B_refined
r_long_range_B_other
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms1708
Nucleic Acid Atoms
Solvent Atoms243
Heterogen Atoms5

Software

Software
Software NamePurpose
REFMACrefinement
PHASERphasing