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Crystal structure of NmrA-like family domain containing protein 1 in complex with NADP and 2-(4-chloro-phenylamino)-nicotinic acid
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 60% TACSIMATE
Crystal Properties Matthews coefficient Solvent content 2.98 58.9
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 57.722 α = 90 b = 79.734 β = 90 c = 86.362 γ = 90
Symmetry Space Group P 2 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARRESEARCH 2009-02-16 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON DIAMOND BEAMLINE I03 Diamond I03
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2 86.36 100 0.1 9.5 4.7 27651 2
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2 2.11 100 0.74 2.1 4.8
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2 50 26250 1391 99.97 0.20449 0.20214 0.2342 0.24779 0.2694 RANDOM 12.544
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.61 0.57 0.04
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.166 r_dihedral_angle_4_deg 15.971 r_dihedral_angle_3_deg 14.085 r_dihedral_angle_1_deg 6.282 r_scangle_it 3.808 r_scbond_it 2.578 r_angle_refined_deg 1.683 r_mcangle_it 1.411 r_angle_other_deg 0.944 r_mcbond_it 0.836
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.166 r_dihedral_angle_4_deg 15.971 r_dihedral_angle_3_deg 14.085 r_dihedral_angle_1_deg 6.282 r_scangle_it 3.808 r_scbond_it 2.578 r_angle_refined_deg 1.683 r_mcangle_it 1.411 r_angle_other_deg 0.944 r_mcbond_it 0.836 r_mcbond_other 0.241 r_chiral_restr 0.1 r_bond_refined_d 0.018 r_gen_planes_refined 0.008 r_bond_other_d 0.002 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2282 Nucleic Acid Atoms Solvent Atoms 252 Heterogen Atoms 65
Software Software Software Name Purpose REFMAC refinement MOSFLM data reduction SCALA data scaling PHASER phasing