2WCO

Structures of the Streptomyces coelicolor A3(2) Hyaluronan Lyase in Complex with Oligosaccharide Substrates and an Inhibitor


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
14M NA-FORMATE
Crystal Properties
Matthews coefficientSolvent content
2.6954

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 140.11α = 90
b = 140.11β = 90
c = 100.652γ = 90
Symmetry
Space GroupP 43 21 2

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDADSC CCDMSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONESRF BEAMLINE ID14-3ESRFID14-3

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.9410089.40.082.863596

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT1.9410063596338289.420.171040.169840.19284RANDOM24.95
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-0.32-0.320.63
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg28.736
r_dihedral_angle_4_deg16.08
r_dihedral_angle_3_deg13.361
r_dihedral_angle_1_deg8.41
r_scangle_it4.603
r_scbond_it3.111
r_angle_refined_deg1.896
r_mcangle_it1.754
r_mcbond_it1.167
r_angle_other_deg1.056
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg28.736
r_dihedral_angle_4_deg16.08
r_dihedral_angle_3_deg13.361
r_dihedral_angle_1_deg8.41
r_scangle_it4.603
r_scbond_it3.111
r_angle_refined_deg1.896
r_mcangle_it1.754
r_mcbond_it1.167
r_angle_other_deg1.056
r_mcbond_other0.45
r_chiral_restr0.128
r_bond_refined_d0.025
r_gen_planes_refined0.011
r_bond_other_d0.002
r_gen_planes_other0.001
r_nbd_refined
r_nbd_other
r_nbtor_refined
r_nbtor_other
r_xyhbond_nbd_refined
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_vdw_refined
r_symmetry_vdw_other
r_symmetry_hbond_refined
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_mcangle_other
r_scbond_other
r_scangle_other
r_long_range_B_refined
r_long_range_B_other
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms5679
Nucleic Acid Atoms
Solvent Atoms768
Heterogen Atoms38

Software

Software
Software NamePurpose
REFMACrefinement
MOSFLMdata reduction
SCALAdata scaling
AMoREphasing